LNX1 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

LNX1

Ligand of numb-protein X 1. (726 aa)

Predicted Functional Partners:

NUMB

0.961

ENSSARP00000004100

0.940

UBA52

0.936

LOC101558621

0.894

ENSSARP00000011469

0.821

SHTN1

0.799

PARD6G

0.765

PARD6A

0.765

PAFAH1B3

0.736

MYO3A

0.735

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000004100	ENSSARP00000011469	ENSSARP00000004100	ENSSARP00000011469	annotation not available	annotation not available	0.453
ENSSARP00000004100	LNX1	ENSSARP00000004100	ENSSARP00000001825	annotation not available	Ligand of numb-protein X 1.	0.940
ENSSARP00000004100	LOC101558621	ENSSARP00000004100	ENSSARP00000005369	annotation not available	Ubiquitin-conjugating enzyme E2 N-like.	0.994
ENSSARP00000004100	NUMB	ENSSARP00000004100	ENSSARP00000010391	annotation not available	NUMB endocytic adaptor protein.	0.610
ENSSARP00000004100	PARD6A	ENSSARP00000004100	ENSSARP00000005668	annotation not available	Par-6 family cell polarity regulator alpha.	0.702
ENSSARP00000004100	PARD6G	ENSSARP00000004100	ENSSARP00000001370	annotation not available	Par-6 family cell polarity regulator gamma.	0.595
ENSSARP00000004100	UBA52	ENSSARP00000004100	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSSARP00000011469	ENSSARP00000004100	ENSSARP00000011469	ENSSARP00000004100	annotation not available	annotation not available	0.453
ENSSARP00000011469	LNX1	ENSSARP00000011469	ENSSARP00000001825	annotation not available	Ligand of numb-protein X 1.	0.821
ENSSARP00000011469	UBA52	ENSSARP00000011469	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.443
LNX1	ENSSARP00000004100	ENSSARP00000001825	ENSSARP00000004100	Ligand of numb-protein X 1.	annotation not available	0.940
LNX1	ENSSARP00000011469	ENSSARP00000001825	ENSSARP00000011469	Ligand of numb-protein X 1.	annotation not available	0.821
LNX1	LOC101558621	ENSSARP00000001825	ENSSARP00000005369	Ligand of numb-protein X 1.	Ubiquitin-conjugating enzyme E2 N-like.	0.894
LNX1	MYO3A	ENSSARP00000001825	ENSSARP00000004603	Ligand of numb-protein X 1.	Myosin IIIA.	0.735
LNX1	NUMB	ENSSARP00000001825	ENSSARP00000010391	Ligand of numb-protein X 1.	NUMB endocytic adaptor protein.	0.961
LNX1	PAFAH1B3	ENSSARP00000001825	ENSSARP00000002963	Ligand of numb-protein X 1.	Platelet activating factor acetylhydrolase 1b catalytic subunit 3.	0.736
LNX1	PARD6A	ENSSARP00000001825	ENSSARP00000005668	Ligand of numb-protein X 1.	Par-6 family cell polarity regulator alpha.	0.765
LNX1	PARD6G	ENSSARP00000001825	ENSSARP00000001370	Ligand of numb-protein X 1.	Par-6 family cell polarity regulator gamma.	0.765
LNX1	SHTN1	ENSSARP00000001825	ENSSARP00000007465	Ligand of numb-protein X 1.	Shootin 1.	0.799
LNX1	UBA52	ENSSARP00000001825	ENSSARP00000000901	Ligand of numb-protein X 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.936