ENSSARP00000001828 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSARP00000001828

annotation not available (277 aa)

Predicted Functional Partners:

INVS

0.676

NDUFAB1

0.636

ENSSARP00000008601

0.636

ENSSARP00000009163

0.636

SDCBP

0.631

KDM2A

0.620

ENSSARP00000007374

0.620

B3GAT1

0.619

DHDH

0.617

DUSP11

0.616

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GAT1	DUSP11	ENSSARP00000006678	ENSSARP00000003979	Beta-1,3-glucuronyltransferase 1.	Dual specificity phosphatase 11.	0.833
B3GAT1	ENSSARP00000001828	ENSSARP00000006678	ENSSARP00000001828	Beta-1,3-glucuronyltransferase 1.	annotation not available	0.619
B3GAT1	INVS	ENSSARP00000006678	ENSSARP00000000070	Beta-1,3-glucuronyltransferase 1.	Inversin.	0.856
DHDH	ENSSARP00000001828	ENSSARP00000010579	ENSSARP00000001828	Dihydrodiol dehydrogenase.	annotation not available	0.617
DUSP11	B3GAT1	ENSSARP00000003979	ENSSARP00000006678	Dual specificity phosphatase 11.	Beta-1,3-glucuronyltransferase 1.	0.833
DUSP11	ENSSARP00000001828	ENSSARP00000003979	ENSSARP00000001828	Dual specificity phosphatase 11.	annotation not available	0.616
DUSP11	INVS	ENSSARP00000003979	ENSSARP00000000070	Dual specificity phosphatase 11.	Inversin.	0.776
ENSSARP00000001828	B3GAT1	ENSSARP00000001828	ENSSARP00000006678	annotation not available	Beta-1,3-glucuronyltransferase 1.	0.619
ENSSARP00000001828	DHDH	ENSSARP00000001828	ENSSARP00000010579	annotation not available	Dihydrodiol dehydrogenase.	0.617
ENSSARP00000001828	DUSP11	ENSSARP00000001828	ENSSARP00000003979	annotation not available	Dual specificity phosphatase 11.	0.616
ENSSARP00000001828	ENSSARP00000007374	ENSSARP00000001828	ENSSARP00000007374	annotation not available	annotation not available	0.620
ENSSARP00000001828	ENSSARP00000008601	ENSSARP00000001828	ENSSARP00000008601	annotation not available	annotation not available	0.636
ENSSARP00000001828	ENSSARP00000009163	ENSSARP00000001828	ENSSARP00000009163	annotation not available	annotation not available	0.636
ENSSARP00000001828	INVS	ENSSARP00000001828	ENSSARP00000000070	annotation not available	Inversin.	0.676
ENSSARP00000001828	KDM2A	ENSSARP00000001828	ENSSARP00000001674	annotation not available	Lysine demethylase 2A.	0.620
ENSSARP00000001828	NDUFAB1	ENSSARP00000001828	ENSSARP00000005169	annotation not available	NADH:ubiquinone oxidoreductase subunit AB1.	0.636
ENSSARP00000001828	SDCBP	ENSSARP00000001828	ENSSARP00000009272	annotation not available	Syndecan binding protein.	0.631
ENSSARP00000007374	ENSSARP00000001828	ENSSARP00000007374	ENSSARP00000001828	annotation not available	annotation not available	0.620
ENSSARP00000008601	ENSSARP00000001828	ENSSARP00000008601	ENSSARP00000001828	annotation not available	annotation not available	0.636
ENSSARP00000009163	ENSSARP00000001828	ENSSARP00000009163	ENSSARP00000001828	annotation not available	annotation not available	0.636