Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
U2AF1L4U2 small nuclear RNA auxiliary factor 1 like 4. (221 aa)    
Predicted Functional Partners:
ENSSARP00000009880
annotation not available
   
 0.990
SF1
Splicing factor 1.
 
 
 0.984
SF3B1
Splicing factor 3b subunit 1.
   
 0.974
ENSSARP00000003402
annotation not available
   
 0.972
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.963
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.961
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.959
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.931
ENSSARP00000000109
annotation not available
   
 
 0.927
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.923
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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