TRPS1 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

TRPS1

Transcriptional repressor GATA binding 1. (1140 aa)

Predicted Functional Partners:

HDAC2

0.942

HDAC1

0.942

ARID4B

0.932

ARID4A

0.931

GATAD2B

0.917

ENSSARP00000004783

0.906

FOXA1

0.887

ENSSARP00000003075

0.868

RBBP7

0.868

ENSSARP00000008041

0.868

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSSARP00000006346	ENSSARP00000010804	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.870
ARID4A	ENSSARP00000003075	ENSSARP00000006346	ENSSARP00000003075	AT-rich interaction domain 4A.	annotation not available	0.975
ARID4A	ENSSARP00000004783	ENSSARP00000006346	ENSSARP00000004783	AT-rich interaction domain 4A.	annotation not available	0.694
ARID4A	ENSSARP00000008041	ENSSARP00000006346	ENSSARP00000008041	AT-rich interaction domain 4A.	annotation not available	0.960
ARID4A	GATAD2B	ENSSARP00000006346	ENSSARP00000010261	AT-rich interaction domain 4A.	GATA zinc finger domain containing 2B.	0.779
ARID4A	HDAC1	ENSSARP00000006346	ENSSARP00000006024	AT-rich interaction domain 4A.	Histone deacetylase 1.	0.960
ARID4A	HDAC2	ENSSARP00000006346	ENSSARP00000000316	AT-rich interaction domain 4A.	Histone deacetylase 2.	0.960
ARID4A	RBBP7	ENSSARP00000006346	ENSSARP00000007313	AT-rich interaction domain 4A.	RB binding protein 7, chromatin remodeling factor.	0.975
ARID4A	TRPS1	ENSSARP00000006346	ENSSARP00000001856	AT-rich interaction domain 4A.	Transcriptional repressor GATA binding 1.	0.931
ARID4B	ARID4A	ENSSARP00000010804	ENSSARP00000006346	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.870
ARID4B	ENSSARP00000003075	ENSSARP00000010804	ENSSARP00000003075	AT-rich interaction domain 4B.	annotation not available	0.975
ARID4B	ENSSARP00000004783	ENSSARP00000010804	ENSSARP00000004783	AT-rich interaction domain 4B.	annotation not available	0.588
ARID4B	ENSSARP00000008041	ENSSARP00000010804	ENSSARP00000008041	AT-rich interaction domain 4B.	annotation not available	0.960
ARID4B	GATAD2B	ENSSARP00000010804	ENSSARP00000010261	AT-rich interaction domain 4B.	GATA zinc finger domain containing 2B.	0.588
ARID4B	HDAC1	ENSSARP00000010804	ENSSARP00000006024	AT-rich interaction domain 4B.	Histone deacetylase 1.	0.961
ARID4B	HDAC2	ENSSARP00000010804	ENSSARP00000000316	AT-rich interaction domain 4B.	Histone deacetylase 2.	0.961
ARID4B	RBBP7	ENSSARP00000010804	ENSSARP00000007313	AT-rich interaction domain 4B.	RB binding protein 7, chromatin remodeling factor.	0.975
ARID4B	TRPS1	ENSSARP00000010804	ENSSARP00000001856	AT-rich interaction domain 4B.	Transcriptional repressor GATA binding 1.	0.932
ENSSARP00000003075	ARID4A	ENSSARP00000003075	ENSSARP00000006346	annotation not available	AT-rich interaction domain 4A.	0.975
ENSSARP00000003075	ARID4B	ENSSARP00000003075	ENSSARP00000010804	annotation not available	AT-rich interaction domain 4B.	0.975