ENSSARP00000001893 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSARP00000001893

annotation not available (255 aa)

Predicted Functional Partners:

GRPEL2

0.996

TIMM17A

0.996

ENSSARP00000009341

0.996

ENSSARP00000004218

0.994

ENSSARP00000010575

0.992

ENSSARP00000010821

0.990

ENSSARP00000009874

0.985

DNAJC15

0.983

C3orf18

0.918

ROMO1

0.915

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3orf18	ENSSARP00000001893	ENSSARP00000012465	ENSSARP00000001893	Chromosome unknown open reading frame, human C3orf18.	annotation not available	0.918
C3orf18	ENSSARP00000004218	ENSSARP00000012465	ENSSARP00000004218	Chromosome unknown open reading frame, human C3orf18.	annotation not available	0.878
C3orf18	ENSSARP00000009341	ENSSARP00000012465	ENSSARP00000009341	Chromosome unknown open reading frame, human C3orf18.	annotation not available	0.921
C3orf18	ENSSARP00000009874	ENSSARP00000012465	ENSSARP00000009874	Chromosome unknown open reading frame, human C3orf18.	annotation not available	0.880
C3orf18	ENSSARP00000010575	ENSSARP00000012465	ENSSARP00000010575	Chromosome unknown open reading frame, human C3orf18.	annotation not available	0.850
C3orf18	GRPEL2	ENSSARP00000012465	ENSSARP00000004932	Chromosome unknown open reading frame, human C3orf18.	GrpE like 2, mitochondrial.	0.836
C3orf18	ROMO1	ENSSARP00000012465	ENSSARP00000006938	Chromosome unknown open reading frame, human C3orf18.	Reactive oxygen species modulator 1.	0.692
C3orf18	TIMM17A	ENSSARP00000012465	ENSSARP00000007965	Chromosome unknown open reading frame, human C3orf18.	Translocase of inner mitochondrial membrane 17A.	0.850
DNAJC15	ENSSARP00000001893	ENSSARP00000006955	ENSSARP00000001893	DnaJ heat shock protein family (Hsp40) member C15.	annotation not available	0.983
DNAJC15	ENSSARP00000004218	ENSSARP00000006955	ENSSARP00000004218	DnaJ heat shock protein family (Hsp40) member C15.	annotation not available	0.972
DNAJC15	ENSSARP00000009341	ENSSARP00000006955	ENSSARP00000009341	DnaJ heat shock protein family (Hsp40) member C15.	annotation not available	0.982
DNAJC15	ENSSARP00000009874	ENSSARP00000006955	ENSSARP00000009874	DnaJ heat shock protein family (Hsp40) member C15.	annotation not available	0.880
DNAJC15	ENSSARP00000010575	ENSSARP00000006955	ENSSARP00000010575	DnaJ heat shock protein family (Hsp40) member C15.	annotation not available	0.970
DNAJC15	ENSSARP00000010821	ENSSARP00000006955	ENSSARP00000010821	DnaJ heat shock protein family (Hsp40) member C15.	annotation not available	0.928
DNAJC15	GRPEL2	ENSSARP00000006955	ENSSARP00000004932	DnaJ heat shock protein family (Hsp40) member C15.	GrpE like 2, mitochondrial.	0.976
DNAJC15	ROMO1	ENSSARP00000006955	ENSSARP00000006938	DnaJ heat shock protein family (Hsp40) member C15.	Reactive oxygen species modulator 1.	0.897
DNAJC15	TIMM17A	ENSSARP00000006955	ENSSARP00000007965	DnaJ heat shock protein family (Hsp40) member C15.	Translocase of inner mitochondrial membrane 17A.	0.976
ENSSARP00000001893	C3orf18	ENSSARP00000001893	ENSSARP00000012465	annotation not available	Chromosome unknown open reading frame, human C3orf18.	0.918
ENSSARP00000001893	DNAJC15	ENSSARP00000001893	ENSSARP00000006955	annotation not available	DnaJ heat shock protein family (Hsp40) member C15.	0.983
ENSSARP00000001893	ENSSARP00000004218	ENSSARP00000001893	ENSSARP00000004218	annotation not available	annotation not available	0.994