GRWD1 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GRWD1

Glutamate rich WD repeat containing 1. (418 aa)

Predicted Functional Partners:

NOC2L

0.993

WDR36

0.984

DDX18

0.982

ENSSARP00000011056

0.977

RRP9

0.972

WDR12

0.971

ENSSARP00000008863

0.969

ENSSARP00000008116

0.968

NOL10

0.967

UTP18

0.966

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX18	ENSSARP00000008116	ENSSARP00000004749	ENSSARP00000008116	DEAD-box helicase 18.	annotation not available	0.901
DDX18	ENSSARP00000008863	ENSSARP00000004749	ENSSARP00000008863	DEAD-box helicase 18.	annotation not available	0.878
DDX18	ENSSARP00000011056	ENSSARP00000004749	ENSSARP00000011056	DEAD-box helicase 18.	annotation not available	0.998
DDX18	GRWD1	ENSSARP00000004749	ENSSARP00000001901	DEAD-box helicase 18.	Glutamate rich WD repeat containing 1.	0.982
DDX18	NOC2L	ENSSARP00000004749	ENSSARP00000005940	DEAD-box helicase 18.	NOC2 like nucleolar associated transcriptional repressor.	0.996
DDX18	NOL10	ENSSARP00000004749	ENSSARP00000005404	DEAD-box helicase 18.	Nucleolar protein 10.	0.898
DDX18	RRP9	ENSSARP00000004749	ENSSARP00000004686	DEAD-box helicase 18.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.880
DDX18	UTP18	ENSSARP00000004749	ENSSARP00000006855	DEAD-box helicase 18.	UTP18 small subunit processome component.	0.923
DDX18	WDR12	ENSSARP00000004749	ENSSARP00000011019	DEAD-box helicase 18.	WD repeat domain 12.	0.998
DDX18	WDR36	ENSSARP00000004749	ENSSARP00000012809	DEAD-box helicase 18.	WD repeat domain 36.	0.978
ENSSARP00000008116	DDX18	ENSSARP00000008116	ENSSARP00000004749	annotation not available	DEAD-box helicase 18.	0.901
ENSSARP00000008116	ENSSARP00000008863	ENSSARP00000008116	ENSSARP00000008863	annotation not available	annotation not available	0.836
ENSSARP00000008116	ENSSARP00000011056	ENSSARP00000008116	ENSSARP00000011056	annotation not available	annotation not available	0.992
ENSSARP00000008116	GRWD1	ENSSARP00000008116	ENSSARP00000001901	annotation not available	Glutamate rich WD repeat containing 1.	0.968
ENSSARP00000008116	NOC2L	ENSSARP00000008116	ENSSARP00000005940	annotation not available	NOC2 like nucleolar associated transcriptional repressor.	0.994
ENSSARP00000008116	NOL10	ENSSARP00000008116	ENSSARP00000005404	annotation not available	Nucleolar protein 10.	0.999
ENSSARP00000008116	RRP9	ENSSARP00000008116	ENSSARP00000004686	annotation not available	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.997
ENSSARP00000008116	UTP18	ENSSARP00000008116	ENSSARP00000006855	annotation not available	UTP18 small subunit processome component.	0.999
ENSSARP00000008116	WDR12	ENSSARP00000008116	ENSSARP00000011019	annotation not available	WD repeat domain 12.	0.988
ENSSARP00000008116	WDR36	ENSSARP00000008116	ENSSARP00000012809	annotation not available	WD repeat domain 36.	0.999