Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCF11PCF11 cleavage and polyadenylation factor subunit. (1635 aa)    
Predicted Functional Partners:
CLP1
Cleavage and polyadenylation factor I subunit 1.
   
 0.998
RBBP6
RB binding protein 6, ubiquitin ligase.
   
 0.998
NUDT21
Nudix hydrolase 21.
    
 0.997
CPSF6
Cleavage and polyadenylation specific factor 6.
    
 0.997
ENSSARP00000011551
annotation not available
    
 0.997
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.996
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.996
ENSSARP00000003901
annotation not available
    
 0.996
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.996
ENSSARP00000008845
annotation not available
   
 0.996
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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