Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHKBP1SH3KBP1 binding protein 1. (695 aa)    
Predicted Functional Partners:
KCTD3
Potassium channel tetramerization domain containing 3.
    
  0.952
CUL3
Cullin 3.
    
 0.945
TNFAIP3
TNF alpha induced protein 3.
    
   0.936
SH3KBP1
SH3 domain containing kinase binding protein 1.
    
 
 0.930
SNX27
Sorting nexin 27.
    
   0.890
LRRC40
Leucine rich repeat containing 40.
    
   0.827
ENSSARP00000002090
annotation not available
    
   0.813
PUS3
Pseudouridine synthase 3.
      
 0.773
MTM1
Myotubularin 1.
      
 0.765
XRCC6
X-ray repair cross complementing 6.
      
 0.713
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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