Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHF3PHD finger protein 3. (2035 aa)    
Predicted Functional Partners:
NIPBL
NIPBL cohesin loading factor.
   
 
 0.967
BPTF
Bromodomain PHD finger transcription factor.
   
 
  0.946
ENSSARP00000005370
annotation not available
   
 0.927
ENSSARP00000006011
annotation not available
   
 
 0.888
ENSSARP00000000943
annotation not available
    
  0.883
ENSSARP00000005058
annotation not available
   
 
 0.870
CXXC1
CXXC finger protein 1.
   
 
 0.860
WDR82
WD repeat domain 82.
     
  0.851
WSB1
WD repeat and SOCS box containing 1.
     
  0.850
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
     
  0.850
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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