Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GOLGB1Golgin B1. (3220 aa)    
Predicted Functional Partners:
ACBD3
acyl-CoA binding domain containing 3.
    
 0.989
STX5
Syntaxin 5.
    
 0.977
GOSR1
Golgi SNAP receptor complex member 1.
    
 0.975
USO1
USO1 vesicle transport factor.
   
 0.973
TMED10
Transmembrane p24 trafficking protein 10.
    
  0.955
COX4I2
Cytochrome c oxidase subunit 4 isoform 2, mitochondrial.
    
   0.944
TMED2
Transmembrane p24 trafficking protein 2.
    
 0.943
TRIP11
Thyroid hormone receptor interactor 11.
   
 
 0.934
ENSSARP00000007674
annotation not available
    
 0.897
YES1
YES proto-oncogene 1, Src family tyrosine kinase.
    
 0.894
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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