UBE3B protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

UBE3B

Ubiquitin protein ligase E3B. (974 aa)

Predicted Functional Partners:

ENSSARP00000004100

0.629

SDE2

0.605

UBA5

0.588

ENSSARP00000005378

0.584

UBA52

0.583

UBA3

0.583

TRIP12

0.582

ENSSARP00000011391

0.582

GART

0.577

NDUFAF7

0.575

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000004100	ENSSARP00000005378	ENSSARP00000004100	ENSSARP00000005378	annotation not available	annotation not available	0.769
ENSSARP00000004100	ENSSARP00000011391	ENSSARP00000004100	ENSSARP00000011391	annotation not available	annotation not available	0.933
ENSSARP00000004100	TRIP12	ENSSARP00000004100	ENSSARP00000006037	annotation not available	Thyroid hormone receptor interactor 12.	0.993
ENSSARP00000004100	UBA3	ENSSARP00000004100	ENSSARP00000012671	annotation not available	Ubiquitin like modifier activating enzyme 3.	0.760
ENSSARP00000004100	UBA5	ENSSARP00000004100	ENSSARP00000005214	annotation not available	Ubiquitin like modifier activating enzyme 5.	0.776
ENSSARP00000004100	UBA52	ENSSARP00000004100	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSSARP00000004100	UBE3B	ENSSARP00000004100	ENSSARP00000001978	annotation not available	Ubiquitin protein ligase E3B.	0.629
ENSSARP00000005378	ENSSARP00000004100	ENSSARP00000005378	ENSSARP00000004100	annotation not available	annotation not available	0.769
ENSSARP00000005378	TRIP12	ENSSARP00000005378	ENSSARP00000006037	annotation not available	Thyroid hormone receptor interactor 12.	0.898
ENSSARP00000005378	UBA3	ENSSARP00000005378	ENSSARP00000012671	annotation not available	Ubiquitin like modifier activating enzyme 3.	0.801
ENSSARP00000005378	UBA5	ENSSARP00000005378	ENSSARP00000005214	annotation not available	Ubiquitin like modifier activating enzyme 5.	0.748
ENSSARP00000005378	UBA52	ENSSARP00000005378	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.769
ENSSARP00000005378	UBE3B	ENSSARP00000005378	ENSSARP00000001978	annotation not available	Ubiquitin protein ligase E3B.	0.584
ENSSARP00000011391	ENSSARP00000004100	ENSSARP00000011391	ENSSARP00000004100	annotation not available	annotation not available	0.933
ENSSARP00000011391	TRIP12	ENSSARP00000011391	ENSSARP00000006037	annotation not available	Thyroid hormone receptor interactor 12.	0.840
ENSSARP00000011391	UBA52	ENSSARP00000011391	ENSSARP00000000901	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.927
ENSSARP00000011391	UBE3B	ENSSARP00000011391	ENSSARP00000001978	annotation not available	Ubiquitin protein ligase E3B.	0.582
GART	SDE2	ENSSARP00000011162	ENSSARP00000006105	annotation not available	SDE2 telomere maintenance homolog.	0.610
GART	UBE3B	ENSSARP00000011162	ENSSARP00000001978	annotation not available	Ubiquitin protein ligase E3B.	0.577
NDUFAF7	UBE3B	ENSSARP00000005604	ENSSARP00000001978	NADH:ubiquinone oxidoreductase complex assembly factor 7.	Ubiquitin protein ligase E3B.	0.575