STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSTM4V-set and transmembrane domain containing 4. (300 aa)    
Predicted Functional Partners:
DUSP19
Dual specificity phosphatase 19.
    
 
 0.710
ENSSARP00000006823
annotation not available
   
 0.673
TMEM170B
Transmembrane protein 170B.
      
 0.593
MDH2
Malate dehydrogenase 2.
    
 0.551
ACTR5
Actin related protein 5.
     
 0.546
ENSSARP00000007529
annotation not available
    
 0.541
GPR137C
G protein-coupled receptor 137C.
      
 0.529
CKAP5
Cytoskeleton associated protein 5.
    
 0.502
PPP2R2B
Protein phosphatase 2 regulatory subunit Bbeta.
    
 0.500
GCNT1
Glucosaminyl (N-acetyl) transferase 1.
     
 0.492
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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