Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMIM4Small integral membrane protein 4. (114 aa)    
Predicted Functional Partners:
C12orf73
Chromosome unknown open reading frame, human C12orf73.
   
 
 0.822
ENSSARP00000003862
annotation not available
      
 0.704
FAM83C
Family with sequence similarity 83 member C.
     
 0.679
UQCC1
Ubiquinol-cytochrome c reductase complex assembly factor 1.
     
 0.679
TMEM97
Transmembrane protein 97.
      
 0.636
SMIM20
Small integral membrane protein 20.
   
  
 0.629
ENSSARP00000011959
annotation not available
   
  
 0.622
TMEM238L
Transmembrane protein 238 like.
      
 0.620
TMEM238
Transmembrane protein 238.
      
 0.620
ENSSARP00000012482
annotation not available
      
 0.620
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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