STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMIM4Small integral membrane protein 4. (114 aa)    
Predicted Functional Partners:
OCIAD1
OCIA domain containing 1.
      
 0.661
DDX28
DEAD-box helicase 28.
      
 0.629
TIMMDC1
Translocase of inner mitochondrial membrane domain containing 1.
      
 0.628
MRM3
Mitochondrial rRNA methyltransferase 3.
      
 0.608
NSUN4
NOP2/Sun RNA methyltransferase 4.
      
 0.602
RDH13
Retinol dehydrogenase 13.
      
 0.565
ENSSARP00000010345
annotation not available
      
 0.558
ENSSARP00000012482
annotation not available
   
  
 0.549
COX18
Cytochrome c oxidase assembly factor COX18.
      
 0.542
NDUFAF4
NADH:ubiquinone oxidoreductase complex assembly factor 4.
      
 0.542
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.