Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DPH3Diphthamide biosynthesis 3. (82 aa)    
Predicted Functional Partners:
DPH2
Diphthamide biosynthesis 2.
   
 0.997
SERGEF
Secretion regulating guanine nucleotide exchange factor.
    
 
 0.984
EEF2
Eukaryotic translation elongation factor 2.
    
 0.952
ENSSARP00000006254
annotation not available
    
 
 0.933
DPH5
Diphthamide biosynthesis 5.
      
 0.788
ENSSARP00000005990
annotation not available
   
  
 0.704
ATP6V1C1
ATPase H+ transporting V1 subunit C1.
   
  
 0.684
WDR7
WD repeat domain 7.
      
 0.673
ENSSARP00000006160
annotation not available
    
 
 0.661
ATP11B
ATPase phospholipid transporting 11B (putative).
      
 0.659
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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