Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D8BTBC1 domain family member 8B. (1173 aa)    
Predicted Functional Partners:
GAPVD1
GTPase activating protein and VPS9 domains 1.
     
 0.827
ENSSARP00000011942
annotation not available
     
 0.754
ENSSARP00000003538
annotation not available
   
 
  0.712
ENSSARP00000012235
annotation not available
     
 0.701
AP5M1
Adaptor related protein complex 5 subunit mu 1.
     
 0.645
CDC16
Cell division cycle 16.
      
 0.644
RAB8B
RAB8B, member RAS oncogene family.
    
 
 0.634
ENSSARP00000000955
annotation not available
    
   0.631
ENSSARP00000001390
annotation not available
   
 
  0.620
AP1M2
Adaptor related protein complex 1 subunit mu 2.
     
 0.620
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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