Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBE2J1Ubiquitin conjugating enzyme E2 J1. (307 aa)    
Predicted Functional Partners:
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.998
AMFR
Autocrine motility factor receptor.
    
 0.995
ERLEC1
Endoplasmic reticulum lectin 1.
   
 0.990
ENSSARP00000009552
annotation not available
   
 0.989
VCP
Valosin containing protein.
    
 0.979
SEL1L2
SEL1L2 adaptor subunit of ERAD E3 ligase.
   
 0.969
ENSSARP00000004519
annotation not available
    
  0.957
HERPUD1
Homocysteine inducible ER protein with ubiquitin like domain 1.
   
 
 0.946
ENSSARP00000007617
annotation not available
    
 0.939
ENSSARP00000005386
annotation not available
    
 0.932
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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