Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATL1Atlastin GTPase 1. (557 aa)    
Predicted Functional Partners:
RTN4
Reticulon 4.
    
 
 0.895
REEP2
Receptor accessory protein 2.
   
 
 0.838
RTN1
Reticulon 1.
   
 
 0.781
RTN2
Reticulon 2.
    
 
 0.774
RTN3
Reticulon 3.
    
 
 0.761
SPAST
Spastin.
    
 
 0.727
FMR1
FMRP translational regulator 1.
    
   0.631
ENSSARP00000005308
annotation not available
    
 
 0.630
ENSSARP00000011305
annotation not available
    
   0.630
KATNA1
Katanin catalytic subunit A1.
    
 
 0.618
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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