STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATL1Atlastin GTPase 1. (557 aa)    
Predicted Functional Partners:
RTN2
Reticulon 2.
    
 
 0.822
SPAST
Spastin.
    
 
 0.814
RTN3
Reticulon 3.
    
 
 0.786
RTN4
Reticulon 4.
    
 
 0.773
REEP2
Receptor accessory protein 2.
    
 
 0.737
RTN1
Reticulon 1.
   
 
 0.736
SPART
Spartin.
      
 0.676
KATNA1
Katanin catalytic subunit A1.
    
 
 0.671
ENSSARP00000009611
annotation not available
    
 
 0.643
ENSSARP00000005308
annotation not available
    
 
 0.624
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.