Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNRPD3Small nuclear ribonucleoprotein D3 polypeptide. (126 aa)    
Predicted Functional Partners:
LOC101559403
Small nuclear ribonucleoprotein E-like.
   
 0.999
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.999
ENSSARP00000004760
annotation not available
   
 0.999
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 0.999
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
ENSSARP00000009876
annotation not available
   
 0.999
SNRPN
Small nuclear ribonucleoprotein polypeptide N.
   
 0.998
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.998
LSM10
LSM10, U7 small nuclear RNA associated.
   
 0.998
SF3B5
Splicing factor 3b subunit 5.
   
 0.998
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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