Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM25RNA binding motif protein 25. (843 aa)    
Predicted Functional Partners:
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
 0.999
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.998
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.996
SF3B1
Splicing factor 3b subunit 1.
   
 0.992
RBM23
RNA binding motif protein 23.
   
 0.991
RBM39
RNA binding motif protein 39.
   
 0.991
DDX46
DEAD-box helicase 46.
   
 0.991
SRRM2
Serine/arginine repetitive matrix 2.
   
 0.989
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.988
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.987
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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