STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC6Histone deacetylase 6. (1126 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
   
 0.976
ARID4A
AT-rich interaction domain 4A.
    
 0.975
ARID4B
AT-rich interaction domain 4B.
    
 0.975
ENSSARP00000004100
annotation not available
    
 0.963
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.943
PTGES3
Prostaglandin E synthase 3.
    
  0.939
H2AZ2
Histone H2A.V.
   
 0.923
MACROH2A1
macroH2A.1 histone.
   
 0.919
MACROH2A2
macroH2A.2 histone.
   
 0.919
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.918
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.