STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSARP00000002200annotation not available (2357 aa)    
Predicted Functional Partners:
SCAF4
SR-related CTD associated factor 4.
   
 0.990
RAMAC
RNA guanine-7 methyltransferase activating subunit.
   
 0.980
ENSSARP00000005370
annotation not available
   
 
 0.931
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 
  0.914
NIPBL
NIPBL cohesin loading factor.
   
    0.824
C9orf72
C9orf72-SMCR8 complex subunit.
      
 0.824
BRCA1
BRCA1 DNA repair associated.
    
 
 0.793
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.757
NCBP2
Nuclear cap binding protein subunit 2.
    
 
 0.745
ENSSARP00000000943
annotation not available
    
 
 0.728
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.