STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBDC1Polysaccharide biosynthesis domain containing 1. (167 aa)    
Predicted Functional Partners:
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 
 0.722
IMPA2
Inositol monophosphatase 2.
      
 0.722
LRRC42
Leucine rich repeat containing 42.
      
 0.665
ENSSARP00000005797
annotation not available
      
 0.630
PDCD5
Programmed cell death 5.
   
    0.629
ENSSARP00000001767
annotation not available
    
   0.548
EEF1A2
Eukaryotic translation elongation factor 1 alpha 2.
    
   0.548
ENSSARP00000007010
annotation not available
      
 0.542
POLR2H
RNA polymerase II subunit H.
   
   0.518
UTP11
UTP11 small subunit processome component.
   
  
 0.500
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.