STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCNM1Sodium channel modifier 1. (224 aa)    
Predicted Functional Partners:
ARMC7
Armadillo repeat containing 7.
    
 
 0.905
SF3B3
Splicing factor 3b subunit 3.
    
   0.901
SF3B1
Splicing factor 3b subunit 1.
    
   0.900
RNF113A
Ring finger protein 113A.
   
   0.898
PRPF8
pre-mRNA processing factor 8.
    
   0.895
ENSSARP00000003402
annotation not available
    
   0.895
CDC5L
Cell division cycle 5 like.
    
   0.895
ENSSARP00000010741
annotation not available
    
   0.853
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 
 0.718
CWC27
CWC27 spliceosome associated cyclophilin.
   
   0.700
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.