STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD1Homocysteine inducible ER protein with ubiquitin like domain 1. (392 aa)    
Predicted Functional Partners:
AMFR
Autocrine motility factor receptor.
   
 
 0.801
ENSSARP00000004874
annotation not available
      
 0.691
XBP1
X-box binding protein 1.
   
  
 0.646
ENSSARP00000003177
annotation not available
    
 
 0.632
ENSSARP00000003211
annotation not available
   
  
 0.612
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.606
COA7
Cytochrome c oxidase assembly factor 7.
    
 
 0.582
DERL1
Derlin 1.
    
 
 0.575
DNAJC3
DnaJ heat shock protein family (Hsp40) member C3.
   
  
 0.556
SIL1
SIL1 nucleotide exchange factor.
      
 0.538
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.