STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD1Homocysteine inducible ER protein with ubiquitin like domain 1. (392 aa)    
Predicted Functional Partners:
AMFR
Autocrine motility factor receptor.
   
 0.995
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 0.977
VCP
Valosin containing protein.
    
 0.949
UBE2J1
Ubiquitin conjugating enzyme E2 J1.
   
 
 0.946
ENSSARP00000009552
annotation not available
     
 0.937
ENSSARP00000005386
annotation not available
     
  0.921
PLAA
Phospholipase A2 activating protein.
     
  0.920
HDAC6
Histone deacetylase 6.
     
  0.919
ERLEC1
Endoplasmic reticulum lectin 1.
     
 0.871
HDAC9
Histone deacetylase 9.
     
 0.845
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.