Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GBP1Guanylate binding protein 1. (591 aa)    
Predicted Functional Partners:
GBP5
Guanylate-binding protein 5.
  
  
 
0.902
SFN
Stratifin.
    
  0.674
PIM2
Pim-2 proto-oncogene, serine/threonine kinase.
    
  0.607
YWHAQ
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta.
    
  0.600
ENSSARP00000007169
annotation not available
     
 0.589
ENSSARP00000010436
annotation not available
     
 0.589
ENSSARP00000009978
annotation not available
   
 
  0.570
GBP6
Guanylate binding protein family member 6.
   
 
  0.570
ENSSARP00000002254
annotation not available
   
 0.523
LOC105942813
Caspase-13-like.
   
 0.523
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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