Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DXODecapping exoribonuclease. (235 aa)    
Predicted Functional Partners:
ENSSARP00000005359
annotation not available
   
 0.991
EXOSC7
Exosome component 7.
   
  0.983
EXOSC4
Exosome component 4.
   
  0.981
EXOSC10
Exosome component 10.
   
 0.950
ENSSARP00000001789
annotation not available
    
   0.944
RPAP2
RNA polymerase II associated protein 2.
    
   0.944
ENSSARP00000012115
annotation not available
   
  0.943
ENSSARP00000007933
annotation not available
    
 
 0.903
ENSSARP00000004349
annotation not available
    
 
 0.892
RPRD1A
Regulation of nuclear pre-mRNA domain containing 1A.
    
 
 0.892
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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