Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM41RNA binding motif protein 41. (411 aa)    
Predicted Functional Partners:
ENSSARP00000010741
annotation not available
   
 0.989
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.982
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.982
SF3B1
Splicing factor 3b subunit 1.
   
 0.981
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.980
ENSSARP00000009876
annotation not available
   
 0.980
PHF5A
PHD finger protein 5A.
   
 0.979
SF3B5
Splicing factor 3b subunit 5.
   
 0.979
ENSSARP00000003402
annotation not available
   
 0.976
SF3B3
Splicing factor 3b subunit 3.
    
 0.976
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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