Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIFBPKinesin family binding protein. (611 aa)    
Predicted Functional Partners:
DCP2
Decapping mRNA 2.
   
 0.962
EDC4
Enhancer of mRNA decapping 4.
   
 0.959
EDC3
Enhancer of mRNA decapping 3.
   
 0.958
ENSSARP00000011304
annotation not available
   
 0.958
ENSSARP00000012242
annotation not available
    
 0.954
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.932
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 0.925
CNOT7
CCR4-NOT transcription complex subunit 7.
   
 0.924
PATL2
PAT1 homolog 2.
   
 0.915
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.915
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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