DDX1 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

DDX1

DEAD-box helicase 1. (731 aa)

Predicted Functional Partners:

FAM98A

0.998

FAM98B

0.998

C2orf49

0.997

RTRAF

0.997

ENSSARP00000004365

0.984

ZBTB8OS

0.965

ATXN2

0.895

FAM49A

0.879

ANO10

0.871

PPP1R8

0.830

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANO10	DDX1	ENSSARP00000004962	ENSSARP00000004151	Anoctamin 10.	DEAD-box helicase 1.	0.871
ATXN2	DDX1	ENSSARP00000005747	ENSSARP00000004151	Ataxin 2.	DEAD-box helicase 1.	0.895
ATXN2	FAM98A	ENSSARP00000005747	ENSSARP00000003145	Ataxin 2.	Family with sequence similarity 98 member A.	0.952
ATXN2	RTRAF	ENSSARP00000005747	ENSSARP00000012265	Ataxin 2.	RNA transcription, translation and transport factor.	0.450
C2orf49	DDX1	ENSSARP00000009127	ENSSARP00000004151	Chromosome unknown open reading frame, human C2orf49.	DEAD-box helicase 1.	0.997
C2orf49	ENSSARP00000004365	ENSSARP00000009127	ENSSARP00000004365	Chromosome unknown open reading frame, human C2orf49.	annotation not available	0.751
C2orf49	FAM98A	ENSSARP00000009127	ENSSARP00000003145	Chromosome unknown open reading frame, human C2orf49.	Family with sequence similarity 98 member A.	0.971
C2orf49	FAM98B	ENSSARP00000009127	ENSSARP00000006701	Chromosome unknown open reading frame, human C2orf49.	Family with sequence similarity 98 member B.	0.998
C2orf49	RTRAF	ENSSARP00000009127	ENSSARP00000012265	Chromosome unknown open reading frame, human C2orf49.	RNA transcription, translation and transport factor.	0.998
C2orf49	ZBTB8OS	ENSSARP00000009127	ENSSARP00000002997	Chromosome unknown open reading frame, human C2orf49.	Zinc finger and BTB domain containing 8 opposite strand.	0.946
DDX1	ANO10	ENSSARP00000004151	ENSSARP00000004962	DEAD-box helicase 1.	Anoctamin 10.	0.871
DDX1	ATXN2	ENSSARP00000004151	ENSSARP00000005747	DEAD-box helicase 1.	Ataxin 2.	0.895
DDX1	C2orf49	ENSSARP00000004151	ENSSARP00000009127	DEAD-box helicase 1.	Chromosome unknown open reading frame, human C2orf49.	0.997
DDX1	ENSSARP00000004365	ENSSARP00000004151	ENSSARP00000004365	DEAD-box helicase 1.	annotation not available	0.984
DDX1	FAM49A	ENSSARP00000004151	ENSSARP00000012853	DEAD-box helicase 1.	Family with sequence similarity 49 member A.	0.879
DDX1	FAM98A	ENSSARP00000004151	ENSSARP00000003145	DEAD-box helicase 1.	Family with sequence similarity 98 member A.	0.998
DDX1	FAM98B	ENSSARP00000004151	ENSSARP00000006701	DEAD-box helicase 1.	Family with sequence similarity 98 member B.	0.998
DDX1	PPP1R8	ENSSARP00000004151	ENSSARP00000011231	DEAD-box helicase 1.	Protein phosphatase 1 regulatory subunit 8.	0.830
DDX1	RTRAF	ENSSARP00000004151	ENSSARP00000012265	DEAD-box helicase 1.	RNA transcription, translation and transport factor.	0.997
DDX1	ZBTB8OS	ENSSARP00000004151	ENSSARP00000002997	DEAD-box helicase 1.	Zinc finger and BTB domain containing 8 opposite strand.	0.965