Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit. (1045 aa)    
Predicted Functional Partners:
SSRP1
Structure specific recognition protein 1.
   
 0.999
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.996
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.991
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.989
MMS22L
MMS22 like, DNA repair protein.
    
 0.988
ENSSARP00000000943
annotation not available
   
 0.983
CDC73
Cell division cycle 73.
   
 0.981
POLR2B
RNA polymerase II subunit B.
   
 0.980
ENSSARP00000001412
annotation not available
   
 0.979
ENSSARP00000005370
annotation not available
   
 0.978
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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