STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1708 aa)    
Predicted Functional Partners:
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.998
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.998
WDR33
WD repeat domain 33.
   
 0.998
CPSF4
Cleavage and polyadenylation specific factor 4.
    
 0.998
ENSSARP00000008845
annotation not available
    
 0.996
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.993
ENSSARP00000003901
annotation not available
    
 0.991
ENSSARP00000001802
annotation not available
    
 0.989
WDR82
WD repeat domain 82.
    
 0.989
PAPOLA
poly(A) polymerase alpha.
    
 0.985
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.