ENSSARP00000004530 protein (Sorex araneus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSSARP00000004530

annotation not available (433 aa)

Predicted Functional Partners:

CDH11

0.543

CDH7

0.543

PCDH15

0.528

CDH20

0.523

CDH18

0.517

ENSSARP00000011359

0.517

ENSSARP00000011388

0.517

CDH19

0.517

ENSSARP00000010933

0.505

ENSSARP00000004017

0.504

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH11	CDH18	ENSSARP00000000536	ENSSARP00000001669	Cadherin 11.	Cadherin 18.	0.921
CDH11	CDH19	ENSSARP00000000536	ENSSARP00000011554	Cadherin 11.	Cadherin 19.	0.921
CDH11	CDH20	ENSSARP00000000536	ENSSARP00000010563	Cadherin 11.	Cadherin 20.	0.921
CDH11	CDH7	ENSSARP00000000536	ENSSARP00000003360	Cadherin 11.	Cadherin 7.	0.921
CDH11	ENSSARP00000004017	ENSSARP00000000536	ENSSARP00000004017	Cadherin 11.	annotation not available	0.921
CDH11	ENSSARP00000004530	ENSSARP00000000536	ENSSARP00000004530	Cadherin 11.	annotation not available	0.543
CDH11	ENSSARP00000010933	ENSSARP00000000536	ENSSARP00000010933	Cadherin 11.	annotation not available	0.925
CDH11	ENSSARP00000011359	ENSSARP00000000536	ENSSARP00000011359	Cadherin 11.	annotation not available	0.961
CDH11	ENSSARP00000011388	ENSSARP00000000536	ENSSARP00000011388	Cadherin 11.	annotation not available	0.921
CDH11	PCDH15	ENSSARP00000000536	ENSSARP00000003536	Cadherin 11.	Protocadherin related 15.	0.971
CDH18	CDH11	ENSSARP00000001669	ENSSARP00000000536	Cadherin 18.	Cadherin 11.	0.921
CDH18	CDH19	ENSSARP00000001669	ENSSARP00000011554	Cadherin 18.	Cadherin 19.	0.921
CDH18	CDH20	ENSSARP00000001669	ENSSARP00000010563	Cadherin 18.	Cadherin 20.	0.921
CDH18	CDH7	ENSSARP00000001669	ENSSARP00000003360	Cadherin 18.	Cadherin 7.	0.923
CDH18	ENSSARP00000004017	ENSSARP00000001669	ENSSARP00000004017	Cadherin 18.	annotation not available	0.937
CDH18	ENSSARP00000004530	ENSSARP00000001669	ENSSARP00000004530	Cadherin 18.	annotation not available	0.517
CDH18	ENSSARP00000010933	ENSSARP00000001669	ENSSARP00000010933	Cadherin 18.	annotation not available	0.921
CDH18	ENSSARP00000011359	ENSSARP00000001669	ENSSARP00000011359	Cadherin 18.	annotation not available	0.923
CDH18	ENSSARP00000011388	ENSSARP00000001669	ENSSARP00000011388	Cadherin 18.	annotation not available	0.921
CDH18	PCDH15	ENSSARP00000001669	ENSSARP00000003536	Cadherin 18.	Protocadherin related 15.	0.905