Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MRPL52Mitochondrial ribosomal protein L52. (128 aa)    
Predicted Functional Partners:
NDUFAB1
NADH:ubiquinone oxidoreductase subunit AB1.
   
 0.982
LOC101549174
39S ribosomal protein L47, mitochondrial-like.
   
 
 0.982
ENSSARP00000000780
annotation not available
   
 
 0.981
MRPL14
39S ribosomal protein L14, mitochondrial-like.
   
   0.979
MRPS30
Mitochondrial ribosomal protein S30.
    
 
 0.974
ENSSARP00000007439
annotation not available
   
 
 0.973
MRPL16
Mitochondrial ribosomal protein L16.
   
 
 0.966
MRPS31
Mitochondrial ribosomal protein S31.
    
 
 0.965
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.962
MRPL13
Mitochondrial ribosomal protein L13.
   
 
 0.961
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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