Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC18Leucine rich repeat containing 18. (261 aa)    
Predicted Functional Partners:
DRG2
Developmentally regulated GTP binding protein 2.
      
 0.742
ATP6AP1L
ATPase H+ transporting accessory protein 1 like.
      
 0.660
MAP7
Microtubule associated protein 7.
    
 
 0.659
ENSSARP00000004722
annotation not available
    
 
 0.647
RNF141
Ring finger protein 141.
      
 0.617
TCTE3
T-complex-associated-testis-expressed 3.
    
 
 0.613
ENSSARP00000002805
annotation not available
    
 
 0.613
CCDC42
Coiled-coil domain containing 42.
    
 
 0.587
PXK
PX domain containing serine/threonine kinase like.
    
 
 0.571
ASCC2
Activating signal cointegrator 1 complex subunit 2.
      
 0.568
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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