Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM23RNA binding motif protein 23. (445 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.991
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.986
SF3B1
Splicing factor 3b subunit 1.
   
 0.983
SON
SON DNA binding protein.
   
  0.980
DDX5
DEAD-box helicase 5.
   
 0.976
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.973
PRPF40A
pre-mRNA processing factor 40 homolog A.
   
 0.973
SF1
Splicing factor 1.
   
 0.954
SAP18
Sin3A associated protein 18.
    
 0.953
ENSSARP00000008153
annotation not available
    
  0.925
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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