RRP9 protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RRP9

Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (475 aa)

Predicted Functional Partners:

NOP58

0.999

FBL

0.998

MPHOSPH10

0.998

SNU13

0.997

ENSSARP00000008116

0.997

ENSSARP00000009048

0.997

UTP4

0.996

UTP18

0.996

UTP6

0.996

UTP15

0.996

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSARP00000008116	ENSSARP00000009048	ENSSARP00000008116	ENSSARP00000009048	annotation not available	annotation not available	0.994
ENSSARP00000008116	FBL	ENSSARP00000008116	ENSSARP00000007885	annotation not available	Fibrillarin.	0.995
ENSSARP00000008116	MPHOSPH10	ENSSARP00000008116	ENSSARP00000008132	annotation not available	M-phase phosphoprotein 10.	0.999
ENSSARP00000008116	NOP58	ENSSARP00000008116	ENSSARP00000011741	annotation not available	NOP58 ribonucleoprotein.	0.989
ENSSARP00000008116	RRP9	ENSSARP00000008116	ENSSARP00000004686	annotation not available	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.997
ENSSARP00000008116	SNU13	ENSSARP00000008116	ENSSARP00000007257	annotation not available	Small nuclear ribonucleoprotein 13.	0.929
ENSSARP00000008116	UTP15	ENSSARP00000008116	ENSSARP00000010713	annotation not available	UTP15 small subunit processome component.	0.996
ENSSARP00000008116	UTP18	ENSSARP00000008116	ENSSARP00000006855	annotation not available	UTP18 small subunit processome component.	0.999
ENSSARP00000008116	UTP4	ENSSARP00000008116	ENSSARP00000003292	annotation not available	UTP4 small subunit processome component.	0.999
ENSSARP00000008116	UTP6	ENSSARP00000008116	ENSSARP00000009736	annotation not available	UTP6 small subunit processome component.	0.999
ENSSARP00000009048	ENSSARP00000008116	ENSSARP00000009048	ENSSARP00000008116	annotation not available	annotation not available	0.994
ENSSARP00000009048	FBL	ENSSARP00000009048	ENSSARP00000007885	annotation not available	Fibrillarin.	0.999
ENSSARP00000009048	MPHOSPH10	ENSSARP00000009048	ENSSARP00000008132	annotation not available	M-phase phosphoprotein 10.	0.998
ENSSARP00000009048	NOP58	ENSSARP00000009048	ENSSARP00000011741	annotation not available	NOP58 ribonucleoprotein.	0.999
ENSSARP00000009048	RRP9	ENSSARP00000009048	ENSSARP00000004686	annotation not available	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.997
ENSSARP00000009048	SNU13	ENSSARP00000009048	ENSSARP00000007257	annotation not available	Small nuclear ribonucleoprotein 13.	0.999
ENSSARP00000009048	UTP15	ENSSARP00000009048	ENSSARP00000010713	annotation not available	UTP15 small subunit processome component.	0.998
ENSSARP00000009048	UTP18	ENSSARP00000009048	ENSSARP00000006855	annotation not available	UTP18 small subunit processome component.	0.993
ENSSARP00000009048	UTP4	ENSSARP00000009048	ENSSARP00000003292	annotation not available	UTP4 small subunit processome component.	0.996
ENSSARP00000009048	UTP6	ENSSARP00000009048	ENSSARP00000009736	annotation not available	UTP6 small subunit processome component.	0.993