STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX39BDExD-box helicase 39B. (374 aa)    
Predicted Functional Partners:
THOC2
THO complex 2.
   
 0.998
POLDIP3
DNA polymerase delta interacting protein 3.
   
 0.996
THOC5
THO complex 5.
   
 0.995
SARNP
SAP domain containing ribonucleoprotein.
   
 0.995
ENSSARP00000008153
annotation not available
  
0.995
THOC6
THO complex 6.
   
 0.994
THOC1
THO complex 1.
   
 0.994
ENSSARP00000006636
annotation not available
   
 0.983
RBM8A
RNA binding motif protein 8A.
   
 0.983
CHTOP
Chromatin target of PRMT1.
   
 0.982
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.