Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRMT6tRNA methyltransferase 6. (497 aa)    
Predicted Functional Partners:
ENSSARP00000000221
annotation not available
   
 0.998
METTL1
Methyltransferase like 1.
   
 
 0.992
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.981
TRMT11
tRNA methyltransferase 11 homolog.
   
 0.979
THUMPD3
THUMP domain containing 3.
   
 
 0.933
HSD17B10
Hydroxysteroid 17-beta dehydrogenase 10.
     
  0.921
EIF3B
Eukaryotic translation initiation factor 3 subunit B.
   
   0.886
WDR12
WD repeat domain 12.
   
    0.869
DDX56
DEAD-box helicase 56.
   
   0.857
DDX18
DEAD-box helicase 18.
   
   0.846
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
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