CBLIF protein (Sorex araneus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CBLIF

Cobalamin binding intrinsic factor. (414 aa)

Predicted Functional Partners:

CUBN

0.995

ENSSARP00000004228

0.862

PCOLCE2

0.806

ENSSARP00000004766

0.740

TCN2

0.712

ENSSARP00000000350

0.677

ENSSARP00000010161

0.654

LRP2

0.626

TRPS1

0.618

ENSSARP00000011405

0.609

Your Current Organism:

Sorex araneus

NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBLIF	CUBN	ENSSARP00000008288	ENSSARP00000011917	Cobalamin binding intrinsic factor.	Cubilin.	0.995
CBLIF	ENSSARP00000000350	ENSSARP00000008288	ENSSARP00000000350	Cobalamin binding intrinsic factor.	annotation not available	0.677
CBLIF	ENSSARP00000004228	ENSSARP00000008288	ENSSARP00000004228	Cobalamin binding intrinsic factor.	annotation not available	0.862
CBLIF	ENSSARP00000004766	ENSSARP00000008288	ENSSARP00000004766	Cobalamin binding intrinsic factor.	annotation not available	0.740
CBLIF	ENSSARP00000010161	ENSSARP00000008288	ENSSARP00000010161	Cobalamin binding intrinsic factor.	annotation not available	0.654
CBLIF	ENSSARP00000011405	ENSSARP00000008288	ENSSARP00000011405	Cobalamin binding intrinsic factor.	annotation not available	0.609
CBLIF	LRP2	ENSSARP00000008288	ENSSARP00000008906	Cobalamin binding intrinsic factor.	LDL receptor related protein 2.	0.626
CBLIF	PCOLCE2	ENSSARP00000008288	ENSSARP00000004491	Cobalamin binding intrinsic factor.	Procollagen C-endopeptidase enhancer 2.	0.806
CBLIF	TCN2	ENSSARP00000008288	ENSSARP00000008714	Cobalamin binding intrinsic factor.	Transcobalamin 2.	0.712
CBLIF	TRPS1	ENSSARP00000008288	ENSSARP00000001856	Cobalamin binding intrinsic factor.	Transcriptional repressor GATA binding 1.	0.618
CUBN	CBLIF	ENSSARP00000011917	ENSSARP00000008288	Cubilin.	Cobalamin binding intrinsic factor.	0.995
CUBN	ENSSARP00000004228	ENSSARP00000011917	ENSSARP00000004228	Cubilin.	annotation not available	0.974
CUBN	ENSSARP00000010161	ENSSARP00000011917	ENSSARP00000010161	Cubilin.	annotation not available	0.572
CUBN	LRP2	ENSSARP00000011917	ENSSARP00000008906	Cubilin.	LDL receptor related protein 2.	0.850
CUBN	TCN2	ENSSARP00000011917	ENSSARP00000008714	Cubilin.	Transcobalamin 2.	0.901
ENSSARP00000000350	CBLIF	ENSSARP00000000350	ENSSARP00000008288	annotation not available	Cobalamin binding intrinsic factor.	0.677
ENSSARP00000000350	ENSSARP00000004228	ENSSARP00000000350	ENSSARP00000004228	annotation not available	annotation not available	0.661
ENSSARP00000004228	CBLIF	ENSSARP00000004228	ENSSARP00000008288	annotation not available	Cobalamin binding intrinsic factor.	0.862
ENSSARP00000004228	CUBN	ENSSARP00000004228	ENSSARP00000011917	annotation not available	Cubilin.	0.974
ENSSARP00000004228	ENSSARP00000000350	ENSSARP00000004228	ENSSARP00000000350	annotation not available	annotation not available	0.661