STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS39VPS39 subunit of HOPS complex. (882 aa)    
Predicted Functional Partners:
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
   
 0.999
VPS41
VPS41 subunit of HOPS complex.
   
 0.999
ENSSARP00000009811
annotation not available
   
 0.999
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.999
ENSSARP00000012355
annotation not available
   
 0.997
ENSSARP00000004934
annotation not available
   
 0.996
ENSSARP00000000140
annotation not available
   
 0.993
VPS8
VPS8 subunit of CORVET complex.
   
 0.993
ENSSARP00000009958
annotation not available
    
 
 0.966
VAMP8
Vesicle associated membrane protein 8.
    
 
 0.962
Your Current Organism:
Sorex araneus
NCBI taxonomy Id: 42254
Other names: Eurasian shrew, European shrew, S. araneus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.