STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45327.1COG:COG4176: ABC-type proline/glycine betaine transport system permease component [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description. (287 aa)    
Predicted Functional Partners:
AHY45328.1
TIGRFAM:TIGR01186:Glycine betaine transport ATP-binding subunit; COG:COG4175: ABC-type proline/glycine betaine transport system ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 0.999
AHY45324.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 
 0.998
AHY45325.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 
 0.998
AHY45326.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 
 0.998
AHY45928.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
 
 0.998
AHY45929.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
 
 
 0.987
AHY46176.1
COG:COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 
 
  
 0.907
AHY47359.1
COG:COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
 
 
  
 0.889
AHY45329.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.762
AHY45330.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.545
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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