STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45328.1TIGRFAM:TIGR01186:Glycine betaine transport ATP-binding subunit; COG:COG4175: ABC-type proline/glycine betaine transport system ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (461 aa)    
Predicted Functional Partners:
AHY45327.1
COG:COG4176: ABC-type proline/glycine betaine transport system permease component [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 0.999
AHY45929.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
 
 0.999
AHY45326.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 0.995
AHY45325.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 0.993
AHY45324.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53850:No Description.
 
 0.992
AHY45928.1
COG:COG2113: ABC-type proline/glycine betaine transport systems periplasmic components [Amino acid transport and metabolism]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
 0.990
AHY47949.1
COG:COG1131: ABC-type multidrug transport system ATPase component [Defense mechanisms]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
     
0.899
AHY45329.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY47806.1
TIGRFAM:TIGR01726:Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; COG:COG0765: ABC-type amino acid transport system permease component [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description; HEQRo_perm_3TM.
 
    
 0.725
AHY46052.1
COG:COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
      0.624
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.