STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45335.1COG:COG1484: DNA replication protein [DNA replication recombination and repair]; Pfam:PF01695:IstB-like ATP-binding protein; Pfam:PF01695:IstB-like ATP-binding protein; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (240 aa)    
Predicted Functional Partners:
AHY46022.1
DnaB: replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.906
AHY45334.1
DnaD domain protein; TIGRFAM:TIGR01446:Replication protein, DnaD/DnaB domain; COG:COG3935: Putative primosome component and related proteins [DNA replication recombination and repair]; Pfam:PF07261:Replication protein, DnaD/DnaB domain; SUPERFAMILY:SSF158499:No Description; DnaD_dom.
  
  
 0.724
AHY45336.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.658
AHY47087.1
COG:COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication recombination and repair]; Pfam:PF00476:DNA-directed DNA polymerase, family A, palm domain; PRINTS:PR00868:DNA polymerase A; ProSitePatterns:PS00447:DNA-directed DNA polymerase, family A, conserved site; SMART:SM00475:5'-3' exonuclease, N-terminal; SUPERFAMILY:SSF56672:No Description.
     
 0.542
dnaA
DnaA: chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 
 0.530
AHY45537.1
TIGRFAM:TIGR00573:DNA polymerase III, epsilon subunit; COG:COG0322: Nuclease subunit of the excinuclease complex [DNA replication recombination and repair]; Pfam:PF00929:Exonuclease, RNase T/DNA polymerase III; ProSiteProfiles:PS50151:UVR domain; SMART:SM00479:Exonuclease; SUPERFAMILY:SSF53098:Ribonuclease H-like domain;KEGG: 00230; KEGG: 00240.
  
  
 0.467
AHY45337.1
COG:COG2333: Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]; Pfam:PF00753:Beta-lactamase-like; Pfam:PF00753:Beta-lactamase-like; SMART:SM00849:Beta-lactamase-like; SUPERFAMILY:SSF56281:No Description.
       0.465
AHY45338.1
TIGRFAM:TIGR00621:Single-strand DNA-binding; COG:COG0629: Single-stranded DNA-binding protein [DNA replication recombination and repair]; Pfam:PF00436:Primosome PriB/single-strand DNA-binding; PIRSF:PIRSF002070:Single-strand DNA-binding; ProSiteProfiles:PS50935:Primosome PriB/single-strand DNA-binding; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
     
 0.460
AHY46658.1
TIGRFAM:TIGR03599:DAK2 domain-containing protein YloV; COG:COG1461: Predicted kinase related to dihydroxyacetone kinase [General function prediction only]; Pfam:PF13684:Dihydroxyacetone kinase family; ProSiteProfiles:PS51480:Dak phosphatase; SUPERFAMILY:SSF101473:Dak phosphatase.
  
     0.456
AHY45333.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.409
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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