STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45339.1COG:COG2814: Arabinose efflux permease [Carbohydrate transport and metabolism]; Pfam:PF07690:Major facilitator superfamily; Pfam:PF07690:Major facilitator superfamily; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter. (383 aa)    
Predicted Functional Partners:
AHY45340.1
COG:COG4297: Uncharacterized protein containing double-stranded beta helix domain [Function unknown]; Pfam:PF07883:Cupin 2, conserved barrel; Pfam:PF07883:Cupin 2, conserved barrel; PIRSF:PIRSF019307:Uncharacterised conserved protein UCP019307, cupin-type; SUPERFAMILY:SSF51182:RmlC-like cupin domain.
       0.651
AHY45338.1
TIGRFAM:TIGR00621:Single-strand DNA-binding; COG:COG0629: Single-stranded DNA-binding protein [DNA replication recombination and repair]; Pfam:PF00436:Primosome PriB/single-strand DNA-binding; PIRSF:PIRSF002070:Single-strand DNA-binding; ProSiteProfiles:PS50935:Primosome PriB/single-strand DNA-binding; SUPERFAMILY:SSF50249:Nucleic acid-binding, OB-fold.
     
 0.597
AHY45341.1
COG:COG0021: Transketolase [Carbohydrate transport and metabolism]; Pfam:PF00456:Transketolase, N-terminal; Pfam:PF00456:Transketolase, N-terminal; ProSitePatterns:PS00802:Transketolase binding site; SMART:SM00861:Transketolase-like, pyrimidine-binding domain; SUPERFAMILY:SSF52518:No Description.
  
    0.462
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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