STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45358.1Conserved repeat domain; TIGRFAM:TIGR01451:Domain of unknown function DUF11; COG:COG0823: Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]; Pfam:PF13205:Bacterial Ig-like domain; SUPERFAMILY:SSF82171:No Description; B_ant_repeat. (588 aa)    
Predicted Functional Partners:
AHY46048.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
 
 0.451
AHY45359.1
PHP domain; COG:COG1796: DNA polymerase IV (family X) [DNA replication recombination and repair]; Pfam:PF02811:PHP, C-terminal; PIRSF:PIRSF005047:Uncharacterised conserved protein UCP005047, YshC; SMART:SM00483:DNA-directed DNA polymerase X; SUPERFAMILY:SSF89550:Polymerase/histidinol phosphatase-like.
       0.410
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.