STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45375.1COG:COG4974: Site-specific recombinase XerD [DNA replication recombination and repair]; Pfam:PF00589:Integrase, catalytic; Pfam:PF00589:Integrase, catalytic; SUPERFAMILY:SSF56349:DNA breaking-rejoining enzyme, catalytic core; Belongs to the 'phage' integrase family. (278 aa)    
Predicted Functional Partners:
AHY46709.1
COG:COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Pfam:PF01580:Cell division protein FtsK/SpoIIIE; Pfam:PF01580:Cell division protein FtsK/SpoIIIE; ProSiteProfiles:PS50901:Cell division protein FtsK/SpoIIIE; SMART:SM00843:DNA translocase FtsK gamma; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.618
AHY47698.1
NUDIX domain; COG:COG1051: ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]; Pfam:PF00293:NUDIX hydrolase domain; ProSitePatterns:PS00893:NUDIX hydrolase, conserved site; ProSiteProfiles:PS51462:NUDIX hydrolase domain; SUPERFAMILY:SSF55811:NUDIX hydrolase domain-like.
  
  
 0.556
AHY45376.1
COG:COG3764: Sortase (surface protein transpeptidase) [Cell envelope biogenesis outer membrane]; Pfam:PF04203:Sortase family; SUPERFAMILY:SSF63817:Sortase domain.
       0.552
AHY47443.1
COG:COG0287: Prephenate dehydrogenase [Amino acid transport and metabolism]; Pfam:PF02153:Prephenate dehydrogenase; Pfam:PF02153:Prephenate dehydrogenase; ProSiteProfiles:PS51176:Prephenate dehydrogenase; SUPERFAMILY:SSF51735:No Description.
  
    0.529
AHY46846.1
COG:COG1040: Predicted amidophosphoribosyltransferases [General function prediction only]; Pfam:PF00156:Phosphoribosyltransferase domain; Pfam:PF00156:Phosphoribosyltransferase domain; SUPERFAMILY:SSF53271:No Description.
   
    0.444
apt
Apt: adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.437
pyrG
PyrG: CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
  
 0.417
recR
recR: recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.414
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.412
AHY46123.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53271:No Description.
   
    0.406
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.