STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45395.1COG:COG1744: Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein [General function prediction only]; Pfam:PF02608:Basic membrane lipoprotein; Pfam:PF02608:Basic membrane lipoprotein; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile. (352 aa)    
Predicted Functional Partners:
AHY45394.1
COG:COG3845: ABC-type uncharacterized transport systems ATPase components [General function prediction only]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 0.996
AHY45392.1
COG:COG1079: Uncharacterized ABC-type transport system permease component [General function prediction only]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
AHY45393.1
COG:COG4603: ABC-type uncharacterized transport system permease component [General function prediction only]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
AHY47744.1
COG:COG1129: ABC-type sugar transport system ATPase component [Carbohydrate transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
     0.730
AHY45396.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.448
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain; Catalyzes the synthesis of GMP from XMP.
     
 0.437
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.