STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45398.1TIGRFAM:TIGR00350:Cell envelope-related transcriptional attenuator; COG:COG1316: Transcriptional regulator [Transcription]; Pfam:PF03816:Cell envelope-related transcriptional attenuator; lytR_cpsA_psr. (312 aa)    
Predicted Functional Partners:
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
   
 0.685
AHY45520.1
COG:COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis outer membrane]; Pfam:PF00953:Glycosyl transferase, family 4; Pfam:PF00953:Glycosyl transferase, family 4.
 
  
 0.643
AHY47068.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.637
cobB-2
COG:COG0846: NAD-dependent protein deacetylases SIR2 family [Transcription]; Pfam:PF02146:Sirtuin family; Hamap:MF_01121:Sirtuin, classIII; Pfam:PF02146:Sirtuin family; ProSiteProfiles:PS50305:Sirtuin family, catalytic core domain; SUPERFAMILY:SSF52467:No Description; Belongs to the sirtuin family. Class III subfamily.
  
    0.589
AHY47619.1
Glycosyltransferase, WecB/TagA/CpsF family; TIGRFAM:TIGR00696:Glycosyl transferase WecB/TagA/CpsF; COG:COG1922: Teichoic acid biosynthesis proteins [Cell envelope biogenesis outer membrane]; Pfam:PF03808:Glycosyl transferase WecB/TagA/CpsF;KEGG: 00051; KEGG: 00510; KEGG: 00512; KEGG: 00513; KEGG: 00514; KEGG: 00522; KEGG: 00524; KEGG: 00533; KEGG: 00540; KEGG: 00550; KEGG: 00561; KEGG: 00563; KEGG: 00600; KEGG: 00601; KEGG: 00603; KEGG: 00604; KEGG: 00906; KEGG: 00908; KEGG: 00941; KEGG: 00942; KEGG: 00944; KEGG: 00945; KEGG: 00965; UniPathway: UPA00566; wecG_tagA_cpsF; Belongs to the [...]
 
   
 0.564
AHY45399.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.521
recF
Recf: DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
     0.504
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.502
AHY46622.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
     
 0.461
AHY45742.1
TIGRFAM:TIGR03025:Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; EPS_sugtrans.
     
 0.452
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.