STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45421.1COG:COG4106: Trans-aconitate methyltransferase [General function prediction only]; Pfam:PF12847:Methyltransferase domain; Pfam:PF12847:Methyltransferase domain; SUPERFAMILY:SSF53335:No Description. (259 aa)    
Predicted Functional Partners:
AHY45422.1
Methyltransferase domain; COG:COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Pfam:PF08242:Methyltransferase type 12; SUPERFAMILY:SSF53335:No Description.
 
   
 0.899
leuD
leuD: 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
     
 0.725
leuC
leuC: 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.718
AHY45420.1
COG:COG1414: Transcriptional regulator [Transcription]; Pfam:PF01614:Transcription regulator IclR, C-terminal; Pfam:PF01614:Transcription regulator IclR, C-terminal; ProSiteProfiles:PS51077:Transcription regulator IclR, N-terminal; SMART:SM00346:Transcription regulator IclR, N-terminal; SUPERFAMILY:SSF55781:No Description.
       0.537
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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