STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45467.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60; ProSiteProfiles:PS50847:LPXTG cell wall anchor domain; SUPERFAMILY:SSF48208:Six-hairpin glycosidase-like. (891 aa)    
Predicted Functional Partners:
AHY45456.1
TIGRFAM:TIGR02094:Alpha-glucan phosphorylase; COG:COG0058: Glucan phosphorylase [Carbohydrate transport and metabolism]; Pfam:PF11897:Glycogen phosphorylase, domain of unknown fuction DUF3417; PIRSF:PIRSF000460:Glycosyl transferase, family 35; SUPERFAMILY:SSF53756:No Description; more_P_ylase.
  
 
 0.718
AHY45466.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.533
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.532
AHY45478.1
TIGRFAM:TIGR02402:Malto-oligosyltrehalose trehalohydrolase; COG:COG0296: 14-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; PIRSF:PIRSF006337:Malto-oligosyltrehalose trehalohydrolase; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily;MetaCyc: PWY-2661; UniPathway: UPA00299; trehalose_TreZ.
  
  
 0.530
AHY47135.1
Glyoxalase-like domain; COG:COG0346: Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]; Pfam:PF12681:Glyoxalase-like domain; SUPERFAMILY:SSF54593:No Description.
  
 
   0.478
AHY45657.1
Peptidase family M23; COG:COG0739: Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis outer membrane]; Pfam:PF01551:Peptidase M23; SUPERFAMILY:SSF51261:Duplicated hybrid motif.
  
     0.449
AHY46893.1
Pfam:PF13668:Ferritin-like domain; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
  
     0.449
AHY45468.1
Transposase DDE domain; Pfam:PF01609:Transposase, IS4-like.
       0.436
AHY47866.1
Sss: transporter, solute:sodium symporter (SSS) family; TIGRFAM:TIGR00813:Sodium/solute symporter, subgroup; COG:COG4147: Predicted symporter [General function prediction only]; Pfam:PF00474:Sodium/solute symporter; ProSitePatterns:PS00457:Sodium/solute symporter, conserved site; ProSiteProfiles:PS50283:Sodium/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.412
AHY46892.1
Pfam:PF13668:Ferritin-like domain; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
  
     0.407
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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